Haplowser Browse haplotypes and their annotations throughout whole genomes
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analyzer Analyze DNA sequence analyze DNA haplotype

Haplowser Description

Haplowser is a small application that allows you to view and analyze DNA sequences. A user can create or open project files (*.prj files), each of which consists of a reference genome sequence and aligned genome sequences to the reference genome sequence. The main window is divided into 5 smaller windows: multiple alignment window, alignment plot window, vertical annotation window (for a reference sequence), and horizontal annotation window (for aligned sequences), property window Main features: Instead of haploid sequences, navigate haplotypes with gene annotations and custom tracks. Multiple alignments of Haplotypes are displayed at the base level. After haploid gene sequences are mapped to haplotypes, diploid gene sequences can be saved by using a mouse operation. Heterozygosity existing at haplotypes is summarized and easily navigated by a user. All the functions are provided though an intuitive user interface.

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