Notung Incorporate loss parsimony into phylogenetic tasks fast and easy.
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Incorporate phylogenetic parsimony statistic parsimony ratchet algorithm phylogenetic task parsimony incorporate loss parsimony parsimony perform parsimony

Notung Description

Notung is a handy, easy to use application specially designed to offer a unified framework for incorporating duplication / loss parsimony into phylogenetic tasks, including · reconciling a gene tree with a species tree and estimating upper and lower bounds on the time of duplication; · rooting an unrooted gene tree by minimizing duplication and loss events; · rearranging a rooted gene tree in areas of weak sequence support to minimize the number of duplications and losses. · resolving a non-binary gene tree by fitting it to a binary species tree. This tool can reconcile or root a non-binary gene tree with a binary species tree or a binary gene tree with a non-binary species tree. The application can also rearrange a non-binary gene tree with a binary species tree. Rearrangement of binary gene trees with non-binary species trees, and reconciliation, rooting, and rearrangement of of non-binary gene trees with non-binary species trees are currently open, algorithmic problems.

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