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Epos
Estimating phylogenies of species....
framework modular software framework phylogenetic analysis phylogenetic visualization
FigTree
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures....
Tree figure phylogenetic graphical viewer phylogenetic trees
DendroPy
Phylogenetic computing library...
Python phylogenetic phylogenetic computation phylogenetic simulation data processing
PhyloSequel
Toolkit and library for BioSQL database interaction and operations....
Python Python wrapper phylogenetic phylogenetic data BioSQL database
Bio::Phylo::IO
Bio::Phylo::IO Perl module contains input and output of phylogenetic data....
Bio::Tree::Compatible
Bio::Tree::Compatible is a Perl module for testing compatibility of phylogenetic trees with nested taxa....
phylogenetic phylogenetic trees trees nested taxa compatibility test
Bio::Phylo
Phylogenetic analysis using Perl...
analysis Perl module perl phylogenetic analysis phylogenetic
PhyloNetwork
PhyloNetwork project contains the python package phylonetwork, used to work with phylogenetic trees and......